Improve your workflow for reproducible science: We recently hosted this workshop on reproducible data analysis in R Markdown and Git, led by data scientist Mine Cetinkaya-Rundel. The recording can be found here and the materials here.

Open science in covid-19 research, ReproducibiliTea journal club (Dec 2nd):Dr Lonni Besançon will present his paper ‘Open Science Saves Lives: Lessons from the COVID-19 Pandemic’. Further details and registration can be found here.

Funding for activities to develop data skills/software: UCL are offering £3000 for projects (£600 each) that support community-based activities which either contribute to the development of software and data skills, foster interdisciplinary research through the reuse of tools and resources (e.g. algorithms, data and software) or strengthen positive attributes of the community. The aim is also to provide PhD students, research and professional service staff opportunities to develop their leadership and advocacy skills. Deadline to apply is the 23 November 2020 (noon). Further details can be found here. 

On 20 March, days after lockdown began, JISC and partners issued a statement calling for Publishers to help in the global effort to combat COVID-19 and support institutions and students to continue their education by making resources available where possible. Since that day, numerous publishers have made temporary changes to their policies, and have begun to make more content freely available online. The Library has been maintaining a list of these newly open resources on the website, along with other help and advice for finding and using resources remotely. There are also lists of resources available from the British Library as well as a brilliant collated list of data and computational resources from the National Institute of Health.

The Copyright Licensing Agency has also made some temporary adjustments to the licence that allows books to be scanned and shared. Please contact the Teaching & Learning Services team for more information.

In addition, there are now tools that allow you to search the web for trustworthy Open Access versions of content from inside your web browser. Just searching Google can bring up not only illegal copies of material, but also inadvertently support predatory and fake journals. The recommended tool is called Open Access Button. More information about Open Access Button is available here

Open Access choices

Just because publishers are making things open for the time being, doesn’t mean they will stay that way. Be careful about the choices you make for your research – in the long term, will the publisher of your chosen journal stop access to your paper? When you are choosing the journal to submit your research to, take a look at the guidance provided by the Open Access team, and also check Sherpa/Romeo to find out whether you are allowed to share your work on RPS, or even on a pre-print service to get it out there even faster!

Don’t forget that you can use the Research Publications Service (RPS) as well as the Research Data Repository (RDR) to take advantage of Open Access to share all of your research outputs to get them out to the rest of the research community.

UCL researchers are accustomed to working across disciplines, with colleagues from many different institutions, to help address the biggest challenges facing the world today. It’s no different with the COVID-19 crisis – though now their work is in the public eye as perhaps never before.

UCL clinical academics have joined frontline medical staff in fighting the outbreak and UCL is providing resources for NHS medical staff. Our researchers are developing rapid tests and tracking systems for COVID-19 and are taking a prominent role in advancing public knowledge about the virus.

Many UCL academics are already releasing papers analysing the outbreak, case studies, predictions about the course of the pandemic and assessments of its economic, health and social implications. In a global crisis, public access to high-quality scientific information is critical. Some publishers have introduced special arrangements to make COVID-19 publications openly available during the pandemic. UCL authors also make their papers openly available UCL Discovery, UCL’s open access repository, where they are curated and kept open access in perpetuity.

In the first of what we hope will be a series of regular posts, we are featuring the latest outputs by UCL academics available in the repository.

A commentary by Diana Margot Rosenthal, Marcella Ucci, Michelle Heys, Andrew Hayward, Monica Lakhanpaul that analyses impact of COVID-19 on families experiencing homelessness: https://discovery.ucl.ac.uk/id/eprint/10095042

Ali Zumla, from UCL Department of Infection, co-authored a paper that analyses imaging findings of the first two patients identified in Italy with COVID-19 infection: https://discovery.ucl.ac.uk/id/eprint/10094977

Andrew Hayward from the Research Department of Epidemiology & Public Health, Sarah Beale from Institute of Health Informatics and Anne M. Johnson from the Institute of Global Health analyse the implications of social distancing to control the pandemic: https://discovery.ucl.ac.uk/id/eprint/10094900 This article is also available on Wellcome Open Research –  a megajournal platform with open peer-review. 

Another article by Andrew Hayward, Sarah Beale and Anne M. Johnson on seasonality seasonality and immunity to laboratory-confirmed seasonal coronavirus is also available for open peer-review on Wellcome Open Research platform. The dataset supporting this article is available in UCL Discovery: https://discovery.ucl.ac.uk/id/eprint/10093909/

Jayant Vaidya, Professor of Surgery & Oncology, has co-authored an article describing methods of reducing infection and rationalising workloads. It’s available in UCL Discovery here: https://discovery.ucl.ac.uk/id/eprint/10094023/

For more on COVID-19 research at UCL, please see our webpages here: https://www.ucl.ac.uk/covid-19-research/