X Close

Open@UCL Blog

Home

Menu

Archive for the 'UCL Discovery' Category

OOSS Annual Recap 2023

By Rafael, on 17 January 2024

As we step into a new year, let’s reflect on the collective achievements and milestones of the UCL Office for Open Science & Scholarship (OOSS) and our associated teams in 2023. This year witnessed the growth and integration of OOSS within the institutional culture of UCL, offering pivotal support to academic staff, researchers, and students. From the successful return to in-person events with our annual conference to pioneering initiatives and awards, let’s revisit the highlights that shaped our work last year!

Annual Conference & Open Access Celebrations

Poster for the Open Science Conference: 'The Case for Social Justice'

In April 2023, we successfully organized our annual conference, marking our first return to in-person events. Themed Open Science and the Case for Social Justice, the conference fostered important discussions on sustainability in research practices, addressing critical issues such as gender, language, authorship, and geographical disparities. Recordings of these insightful discussions are available. Notably, a workshop during the conference addressed equity in authorship, contributing to a forthcoming UCL statement on Authorship. Additionally, October saw the celebration of our Open Access week, themed Community over Commercialisation. This included a series of blog posts, activities, and discussions, emphasizing equitable access to a wide range of works.

Honouring Excellence: Inaugural Open Science and Scholarship Awards:Group photo of the 12 Winners of the inaugural Open Science and Scholarship Awards standing together in front of a white wall.

Another highlight was the inaugural Open Science and Scholarship Awards at UCL in collaboration with the UK Reproducibility Network. These awards aimed to recognize and celebrate the efforts of UCL students and staff who champion open science practices. Learn more about the winners and their innovative work!

Open Access: Profiles & Transformative Agreements

alt=""

The Open Access Team played a pivotal role in ensuring the open availability of UCL academics’ research outputs throughout 2023. A major achievement was the successful introduction of the new Profiles platform, replacing the outdated IRIS. Profiles acts as UCL’s public search and discovery tool, significantly improving the visibility of academic profiles, publication lists, research and teaching activities, and collaborations with UCL colleagues. The team also facilitated the Gold open access publication of 3,383 papers in 2023, contributing to the thriving UCL Discovery with over 44 million downloads. The repository now boasts over 166,000 open access items, including 23,400 theses, with over 18,500 uploads in the preceding twelve months.

Aligned with the UKRI and Wellcome open access policies, the Open Access Team provided robust support for UCL researchers. This included facilitating compliance through publishing in fully open access journals, making use of transformative agreements with publishers encompassing over 12,000 journals, and using funders’ language to secure the right to make accepted manuscripts freely accessible upon publication under the CC BY license.

Research Data: Enhancing Support to Researchers

The Research Data team introduced a more user-friendly version of the UCL Research Data Repository, incorporating enhanced features and a comprehensive user manual. The repository saw a significant influx of 193 new items, including data sets, media items, and software applications. Engaging with researchers, the team provided substantial assistance, reviewing 32 data management plans and conducting successful training sessions for 61 researchers. Additionally, the team expanded and refined frequently asked questions (FAQs) for better user support.

Citizen Science: New website and initiatives

Word cloud image featuring key terms related to citizen science

The Citizen Science Team expanded its reach and impact in 2023 through new Citizen Science website pages and an enhanced list of citizen science projects at UCL, fostering a greater understanding of the breadth of such initiatives across the university. The creation of a unifying definition of citizen science at UCL, accompanied by an inclusive word cloud, provided clarity on the diverse subject areas and disciplines covered by citizen science projects.

The development of the UCL Citizen Science Certificate, in collaboration with the UCL Citizen Science Academy, marked a significant milestone and underscored our commitment to fostering collaborative initiatives. A new Citizen Science community on MS Teams was launched, providing a dedicated space for discussions and updates. Get involved!

Bibliometrics: Measuring Research Impact

The Bibliometrics Team, in collaboration with the Open Access Team, played a crucial role in implementing the new Profiles system. Their research confirmed the citation advantage associated with open access practices. After a detailed analysis of UCL publications over recent years, the study demonstrated that open access materials are utilised and cited more extensively, and confirmed the place of the institution as leading organisation in making material available in open access.

Additionally, the team introduced new courses, including an introduction to altmetrics and the Overton database, aiming to assess the broader impact of published research in the wider world and cover policy documents and official documents. Another training provided an overview of understanding and demonstrating research impact, further supporting UCL’s researchers. The Bibliometrics Team’s dedication to understanding and demonstrating research impact through various courses and collaborations reinforced UCL’s position as a leader in research output accessibility.

Stay connected and Informed

alt=""

The combined efforts of OOSS teams in 2023 exemplify UCL’s commitment to open and accessible research practices across diverse disciplines. As we move forward, the OOSS remains dedicated to fostering an inclusive culture of open science and scholarship, shaping a transformative academic environment at UCL.

Join us in 2024 for updates and insights, and follow us on X, formerly Twitter, to find out more about open science and scholarship at UCL!

Open Access Week: A year in review

By Kirsty, on 25 October 2023

It has become somewhat of a tradition now for there to be a post during Open Access Week that reviews the previous year. While the middle of October may seem like a strange time to take stock, it is after all the anniversary of the Launch of the Office for Open Science & Scholarship and we like to stop and celebrate another year.

This year we celebrated another successful conference and our first back in person for us! We also had another first with a workshop taking place simultaneously online and in person on the topic of equity in authorship. This work has been fed into a UCL statement on Authorship that will be released in the coming months.

We also released a brand new page bringing together all of the training and support information across all the Open Science affiliated teams to make it easier to navigate and get your questions answered.

In the past year all of the teams that form part of the office have worked hard on developing new services and making improvements to existing ones.

The Open Access team have been working hard updating RPS and the new Profiles tool to replace IRIS. They also support both Gold and Green Open Access Activity across the university.

Over 18,500 items have been uploaded to UCL Discovery in the last 12 months, bringing the total to over 166,000! Of these, there are over 23,000 theses to be explored. They have also made 3,383 papers Gold OA, 2,700 of which were using our transformative agreements with publishers.

The Research Data Management team have been working hard behind the scenes doing an overhaul of their support materials, testing new materials for training and supporting the ever-growing Research Data Repository.

In the past 12 months we have had over 1000 new datasets from 226 users. Quite notably, we have had over 200,000 downloads which just goes to show the value of sharing your data as well as your other research outputs!

The Citizen Science support service has moved on in leaps and bounds since this time last year, creating content, liaising with colleagues across the university, collaborating to launch the UCL Citizen Science Academy and this week we were able to launch the brand new Citizen Science online community.

Hopefully that gives you a taste of what we have been up to and the numbers of the last year, scroll back through the blog for more information and to get an idea of the detail of what we have been up to. It’s been a great year and here’s to the next!

Happy Open Access Week!

What is Open Access?: new video for UCL researchers

By Kirsty, on 26 October 2022

This Open Access Week, we’re delighted to be launching a new video designed to help new UCL staff and students understand some of the key ideas in open access. With so many different open access routes, including fully OA, transformative agreements and Green, and myriad open access policies – including UKRI, Wellcome, NIHR, CRUK, Horizon Europe/ERC and REF – unfortunately open access is often more complex than we would like. We cover all the detail on our webpages, but we’re hoping that this short video, the first of a pair, will be a helpful introduction for new UCL staff and early career researchers, and a handy reference for other researchers. In just two-and-a-half minutes, it covers:

  1. What open access is and why it is important
  2. Green/Gold open access
  3. Fully open access/hybrid journals
  4. Transformative agreements

The eagle-eyed will spot a small spoiler about a second video, which will explain what UCL authors need to do about open access. We’re working on that now, and it should be available in the next few months.

Departments may like to add links to our videos to their induction materials. Here are the videos available at the moment:

  • What is Open Access?
  • What is RPS?, Claiming and adding publication in RPS, Uploading a manuscript to RPS

We hope you enjoy these new resources.

Welcome to Open Access Week – Review of the year 2021-22

By Kirsty, on 24 October 2022

Another year has passed and another Open Access Week is upon us! Since the foundation of the UCL Office for Open Science & Scholarship, it has become traditional for us to start Open Access week with a review of the last year.

It has been a busy year in the Office and in all of the teams that support Open in various guises across the university. Instead of a dull report from me about facts and figures, the LCCOS communications team have created a fun, snappy video with all the highlights!

In the past year UCL Press has released numerous new books, and their e-textbooks project is coming on in leaps and bounds. The team at the office have released new resources, and the Open Access team has a huge range of new Transformative deals as well as video content in the pipeline to help simplify the complicated world of Open Access for you – one is even coming out later this week!

We hope you enjoy Open Access week – and here’s to another great year!

Technical update: RPS and UCL Discovery

By Kirsty, on 1 February 2022

UCL researchers manage their publications and upload papers in the Research Publications Service (RPS).  The uploaded papers are made available in our open-access repository, UCL Discovery, in accordance with the publishers’ copyright conditions.  The connection between these two distinct systems has recently been updated; this blog post summarises the minor differences in behaviour that RPS users may notice as a result.

The upgrade provides immediate improvements to the back-end, technical management of RPS and UCL Discovery by ISD and the provider of the RPS platform, lays the foundations for future improvements in publications management and display, and ensures the ongoing robustness of the systems as open-access policies and mandates continue to develop.

UCL Discovery as a data source

The connection between RPS and UCL Discovery previously allowed the deposit (upload of files) of publications from RPS to UCL Discovery only.  The upgrade activates the harvest of bibliographic information, or metadata, from the UCL Discovery record back to RPS.

This means that all RPS records for which the full text has been uploaded now contain a UCL Discovery data source, alongside the existing data sources that have been created manually or harvested from external databases, such as Crossref, PubMed, Scopus, and Web of Science.  As with all data sources, the UCL Discovery data source can be set as the “preferred record” in RPS in order for its metadata to display publicly in IRIS.

No file reupload possible in RPS

Every RPS publication record includes a “full text” window where the full text file, if one has been uploaded, and its status in UCL Discovery is displayed.  It was previously possible to access this area after the upload and to “remove the licence from the repository”, upload a new file, and even to delete the existing file.  However, none of these actions had a direct effect on the existing UCL Discovery record: for instance, a file deleted through RPS would still be accessible in UCL Discovery without further intervention by the Open Access Team.

A change in system behaviour as part of the upgrade has resulted in this functionality no longer being present: if a file that has been uploaded in RPS needs to be replaced or removed, for any reason, please therefore contact the Open Access Team, who will be able to carry out the necessary actions in UCL Discovery.

The Open Access Team is aware that some publication uploads consist of multiple files, for example if there is a supplementary file in addition to the file containing the main text of the research output, or if the accepted manuscript version of the output consists of figure and table files that are separate from the main text.  Uploading multiple files within a single publication record is still possible, as the screenshot below demonstrates:

Please direct questions about managing publications in RPS and UCL Discovery to the Open Access Team.

UCL Discovery reaches 30 million downloads!

By Kirsty, on 22 November 2021

UCL Publications Board and the Open Access Team are delighted to announce that on Friday 19 November UCL’s institutional repository, UCL Discovery, reached the milestone of 30 million downloads! UCL Discovery is UCL’s open access repository, showcasing and providing access to UCL research outputs from all UCL disciplines. UCL authors currently deposit around 1,750 outputs in the repository every month (average figure January-October 2021).

by Ray Hennessy on Unsplash https://unsplash.com/photos/gdTxVSAE5sk

Our 30 millionth download was of a journal article:
Huber, LR; Poser, BA; Bandettini, PA; Arora, K; Wagstyl, K; Cho, S; Goense, J; Nothnagel, N; Morgan, AT; van den Hurk, J; Müller, AK; Reynolds, RC; Glen, DR; Goebel, R; Gulban, OF; (2021) LayNii: A software suite for layer-fMRI. NeuroImage, 237, Article 118091. 10.1016/j.neuroimage.2021.118091.

This article introduces a new software suite, LayNii, to support layer-specific functional magnetic resonance imaging: the measurement of brain activity by detecting changes associated with blood flow. The software itself, which is compatible with Linux, Windows and MacOS, is also open source via Zenodo, DockerHub, and GitHub. The authors also made a preprint version of the article available via BioRxiv in advance of formal publication in NeuroImage. This demonstrates the combined value of open source software and open access to research publications.

The author of the article based at UCL, Dr Konrad Wagstyl, deposited the article in UCL Discovery in May 2021. Dr Wagstyl is a Sir Henry Wellcome Research Fellow at the Wellcome Centre for Human Neuroimaging, UCL, and co-leads the Multicentre Epilepsy Lesion Detection project, an open science collaboration to develop machine learning algorithms to automatically subtle focal cortical dysplasias – areas of abnormal brain cell development which can cause epilepsy and seizures – in patients round the world.

The UCL Office for Open Science and Scholarship recommends that researchers make any software or code they use available to aid others in reproducing their research. The Research Data Management team maintain a guide on best practice for software sustainability, preservation and sharing, and can give further support to UCL researchers as required.

Open Access theses

By Kirsty, on 31 March 2021

Among the many things that can be made Open Access; publications, data, software, and so many more, it is now increasingly more common for PhD theses to be made Open Access. This can be a great resource when you are undertaking your own PhD to get an idea of scope, structure and can be a great source of ideas.

Finding Open Access theses

UCL Library Services manages the DART-Europe service, the premier European portal for the discovery of open access research theses.  At the time of writing, this service provides access to over one million research theses from 564 Universities in 29 European countries.  It was founded in 2005 as a partnership of national and university libraries and consortia to improve global access to European research theses.  It does this by harvesting data from thesis repositories at contributing institutions, including from UCL Discovery (see below), and providing a link to at least one open access electronic copy of each thesis.  The theses themselves are located on the websites of the contributing institutions.

Users of the DART-Europe portal can search this vast database by keyword, or browse by country or institution, and view the research theses in full, without charge.  New theses are added every day, from doctoral and research masters programmes in every academic discipline.  For more information about the service, please contact the DART-Europe team.  Institutions not currently represented in the portal can view information on how to contribute to DART-Europe.

In normal times, the digitisation of doctoral theses can also be requested on an individual basis through the British Library’s e-theses online service (EThOS).  This is a database of all UK doctoral theses held in university library collections, with links to open access copies in institutional repositories, and hosted directly in EThOS, where available.  If an electronic copy is not available, you can create an account with the service to request digitisation of the print copy: this prompts the institution where the thesis is held to find and check the print thesis, and then send it to the British Library’s facility at Boston Spa for digitisation.  Please note that this process incurs a charge (which is indicated during the requesting process) and is currently suspended due to COVID-19 restrictions.

Your thesis – UCL Discovery

Since the 2008-09 academic year, UCL students studying for doctoral and research master’s degrees have been required to submit an electronic copy of their thesis to the Library as a mandatory condition of the award of their degree.  Students are encouraged to make their theses openly available in UCL Discovery, our open access institutional repository, although in practice access can be restricted for a number of reasons if necessary.  A citation of the thesis appears in UCL Discovery even if access to the full text is restricted.

Older theses have also been digitised and added to UCL Discovery retrospectively.  The bulk of this work has been carried out as part of a specific project covering over 10,000 theses from 1990 to 2008.  This project is ongoing but mostly complete: over 7,000 digitised theses have been added to UCL Discovery during the last twelve months alone by Library Services staff who have not been able to carry out their normal work due to COVID-19 restrictions.

If you cannot access a UCL thesis which is listed online through these methods, please contact the Open Access Team, who will be able to provide advice on options for obtaining access.

New Year open access reflections

By Catherine Sharp, on 11 January 2021

Fireworks over Eiffel Tower.Whether you were tucked up in bed early on New Year’s Eve 2020, or come midnight enjoyed what limited indulgences are available nowadays, there’s no doubt that many of us are keen to put 2020 firmly behind us. Here in UCL’s Office for Open Science and Scholarship (OOSS) 2021 appears bright, with lots of exciting developments in open research and open access coming up; but we wanted to spend our first post of the new year unfashionably looking back, and highlighting some of the great things that happened in open access in 2020.

Without further ado, here’s a rundown of some of UCL’s 2020 open access highlights.

Finally – not a number, but an achievement for the Open Access Team nonetheless – we overhauled our open access funding webpages, Wellcome and other funders webpages, and in fact most of our online guidance. Since open access continues to be rather complex, to say the least, we also added a glossary to the webpages. We’ll be making more improvements soon, but hope that you’ve found these ones useful so far.

I’d like to say a thank you to my magnificent colleagues, who’ve processed such huge numbers of papers and kept on top of the ever-growing numbers of enquiries about open access: hard to count, but probably up to a hundred questions every day, many of them very complicated. Thanks also to everyone in the UCL community who works with us to make open access happen. Look out for new transformative agreements coming soon, and very best wishes for a good 2021.

Open Access at UCL in numbers

By Patrycja, on 8 October 2020

This is the first in a new series of regular posts in which we plan to celebrate the huge numbers of research outputs that UCL academics are making open access, and the impact of this worldwide.

UCL Discovery in numbers

Despite this year’s unprecedented demands on academics, UCL authors have been depositing their papers at the same impressive rate as before COVID. Our team has continued to process 1,600 papers each month, on average, making them openly available in UCL Discovery, our institutional repository. As of October, the repository holds over 105,000 outputs that are currently openly available to download – this is a significant increase from over 83,000 that were available at the same time last year, and a testament to the success of the REF open access policy.

Research outputs in UCL Discovery have just reached over 22 million lifetime downloads, of which over 3 million are downloads of open access books published by UCL Press. Our global readership spans over 250 countries; the top five countries downloading from the repository are the US, UK, India, Canada and Germany.

This year alone, the repository had over 3,300,000 downloads. The most popular item so far in 2020, with over 11,000 downloads, is a journal article originally published in Nature, Mastering the game of Go without human knowledge. Other popular items include a recent publication from UCL Press, The Responsibility of Intellectuals: Reflections by Noam Chomsky and others after 50 years, with over 8,000 downloads (interestingly, this book is particularly popular in Canada). How the World Changed Social Media is also going strong this year, and kept its position in the top 10 most downloaded items (more than 88,000 lifetime downloads). Unsurprisingly, an article on COVID-19, The continuing 2019-nCoV epidemic threat of novel coronaviruses to global health, is also one of the top downloaded items, with over 8,000 downloads so far.

RPS in numbers

We’ve written before about the new functionality that we introduced to UCL’s Research Publications Service this summer. It allows you to send publications recorded in RPS to your ORCID record automatically. 75% of research staff have added their ORCID record to RPS to enable autoclaiming. We’re very excited that 20% of those have also now given RPS permission to send publications to their ORCID record, so they don’t have to add them manually. It’s great that so many academics are linking and sharing information about research outputs in this way, and we hope that it soon becomes a time-saver for many more. You can find out more about the tool, and how easy it is to set it up, on our ORCID guide.

Doctoral theses in UCL Discovery

Of all the items that are available in UCL Discovery, over 18,000 are doctoral thesis. At UCL, the requirement to submit an electronic copy of your thesis as a condition of award has been in place since 2009. In addition to that, we have retrospectively digitised theses from earlier years, as a part of a collaborative project with ProQuest. Currently, over 8,000 retrospectively digitised thesis are available in the repository. The oldest digitised thesis dates as far back as 1933.

UCL theses are one of the most downloaded types of item in the repository, with over 7 million lifetime downloads. The most popular doctoral thesis, with over 3,600 downloads over the last twelve months, is a 1992 thesis, Fatigue and fracture mechanics analysis of threaded connections, available here.

Gold open access in numbers

So far, we’ve focused on the Green route to open access, where outputs are made available, usually as final accepted manuscripts, after the publisher’s embargo period. Plan S funders, of course, will soon require immediate open access, and Plan S’s Rights Retention Strategy will allow authors to make papers published in subscription journals open access without an embargo (option 2 in Plan S).

Many UCL academics publish via the Gold route to open access, either in fully open access journals (option 1 in Plan S), or under transformative agreements (option 3 in Plan S). This year to date UCL’s Open Access Team has arranged immediate open access for over 1,800 UCL papers.

There are more than 5,000 journals covered in UCL’s transformative agreements, including small and society publishers like Electrochemical Society, European Respiratory Journal, IWA Publishing, Microbiology Society, Portland Press Biochemical Society journals, Rockefeller University Press, Royal Society of Chemistry. This allows authors publishing in these journals to comply with their funders’ requirements and Plan S. Negotiations with other publishers are happening for 2021.

Until the end of this year, papers funded by the Wellcome Trust that are submitted to  subscription journals can still use UCL’s Wellcome funds. Papers submitted from 1 January 2021 will need to follow the requirements of the new Wellcome open access policy [link], which means that funds will only be available for open access in fully open access journals and subscription journals that are part of UCL’s transformative agreements. Other papers will need to follow the Wellcome’s second route to open access, depositing their manuscript in Europe PubMed Central, to be made open access immediately, under the Rights Retention Strategy. We expect the current arrangements for papers funded by one of the UK Research Councils to continue until a new UKRI open access policy is introduced next year.

During OA Week we have a Q&A session on open access. This event, for UCL researchers, is an opportunity to ask questions about the new open access funding arrangements, transformative agreements, Plan S, depositing your research in UCL Discovery, and more. Sign up via Eventbrite to receive a link to join the session.

UCL researchers respond to COVID-19 pandemic

By Patrycja, on 21 April 2020

UCL researchers are accustomed to working across disciplines, with colleagues from many different institutions, to help address the biggest challenges facing the world today. It’s no different with the COVID-19 crisis – though now their work is in the public eye as perhaps never before.

UCL clinical academics have joined frontline medical staff in fighting the outbreak and UCL is providing resources for NHS medical staff. Our researchers are developing rapid tests and tracking systems for COVID-19 and are taking a prominent role in advancing public knowledge about the virus.

Many UCL academics are already releasing papers analysing the outbreak, case studies, predictions about the course of the pandemic and assessments of its economic, health and social implications. In a global crisis, public access to high-quality scientific information is critical. Some publishers have introduced special arrangements to make COVID-19 publications openly available during the pandemic. UCL authors also make their papers openly available UCL Discovery, UCL’s open access repository, where they are curated and kept open access in perpetuity.

In the first of what we hope will be a series of regular posts, we are featuring the latest outputs by UCL academics available in the repository.

A commentary by Diana Margot Rosenthal, Marcella Ucci, Michelle Heys, Andrew Hayward, Monica Lakhanpaul that analyses impact of COVID-19 on families experiencing homelessness: discovery.ucl.ac.uk/id/eprint/1009

Ali Zumla, from UCL Department of Infection, co-authored a paper that analyses imaging findings of the first two patients identified in Italy with COVID-19 infection: https://discovery.ucl.ac.uk/id/eprint/10094977

Andrew Hayward from the Research Department of Epidemiology & Public Health, Sarah Beale from Institute of Health Informatics and Anne M. Johnson from the Institute of Global Health analyse the implications of social distancing to control the pandemic: discovery.ucl.ac.uk/id/eprint/1009 This article is also available on Wellcome Open Research –  a megajournal platform with open peer-review. 

Another article by Andrew Hayward, Sarah Beale and Anne M. Johnson on seasonality seasonality and immunity to laboratory-confirmed seasonal coronavirus is also available for open peer-review on Wellcome Open Research platform. The dataset supporting this article is available in UCL Discovery: https://discovery.ucl.ac.uk/id/eprint/10093909/

Jayant Vaidya, Professor of Surgery & Oncology, has co-authored an article describing methods of reducing infection and rationalising workloads. It’s available in UCL Discovery here: discovery.ucl.ac.uk/id/eprint/1009

For more on COVID-19 research at UCL, please see our webpages here: https://www.ucl.ac.uk/covid-19-research/