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UCL ARC at the 2024 International RSE Conference

By Jonathan Cooper, on 18 November 2024

This year’s RSE conference took place from 3rd – 5th September in Newcastle. Around 20 ARC staff attended in person, with several others joining in the hybrid experience remotely. The latter has been steadily improving year on year, at least for contributing to the formal parts of the conference programme. The informal conversations are still much better in person, and this aspect was particularly appreciated by our newer RSEs. This blog post summarises our joint impressions of the conference, based on a debriefing discussion we had in our weekly “Collaboration Hour” later in September, and edited by Jonathan Cooper. We have raced against the conference committee to get this blog post out before the conference materials are published!

The programme had a mix of technical topics and sessions devoted to how we work as RSEs, and indeed wider “Research Technology Professionals” (RTPs) as well. RTP is a newly coined phrase used by UKRI among others to refer to the wide range of specialist roles that exist alongside traditional researchers, encompassing all the ARC professions and more. Several initiatives are aiming to leverage the success of the RSE movement to advance other professions in a similar way, some of which we are involved in or proposed at the conference, notably in the RSE leaders and aspiring leaders satellite event on the Monday. This has grown massively since its inception as a safe space for those struggling to create RSE groups to share the pain and learn from each other! Now there are many kinds of RSE group, many individuals in different RTP leadership roles, and much more wide-ranging discussions as a result. I particularly appreciated the session on the skills that leaders need in this environment – what people have found helpful and how we should be growing the next generation.

A similar topic was covered in the RSE Competencies workshop, although this covered all areas of RSE skills and tried to categorise these. We ended up with more non-technical skills than those focused on specific technologies. The work is ongoing with monthly community meetings, aiming to build a toolkit that will help people advance their careers: identify skills they need and avenues for training and professional development.

Several sessions focused on project management and Agile approaches. We heard from Manchester how they are adapting Scrum for their research projects, notably the categorisation of projects that they have according to how large they are and how engaged the researchers are, and therefore the different sort of tweaks they’re made to Scrum in each case. These seem to be fairly similar to how we operate in ARC, but in a more formalised structure. We contributed to the discussion session they ran on the following day (led by Sarah Jaffa, formerly of ARC!) with Monika and I doing a double act presenting a high level view of our approach and a summary of Kanban. An important theme of that session was that project management is as much about self-care as it is delivering on the goals of the project, and these aspects need to be well balanced or both suffer. A special interest group (SIG) is being set up dedicated to project management, and we have continued discussions within ARC too, with a recent blog post on adapting the agile values and principles to a research context.

Others in the group focused more on the technical programme. Mutation testing was one highlight – described as sort of like test coverage, but your code is randomly changed to see what breaks. If no tests fail then you may have revealed an untested code path that needs to be tested and fixed. It’s good for catching edge cases that haven’t been thought of but does take time to run. We noted that this is good as part of a wider array of testing approaches that can be used, for example hypothesis testing (randomising code inputs rather than the code itself).

Best practices for setting up development environments were covered in a couple of talks, and how this is perhaps one aspect that distinguishes an RSE from a CS researcher. These range from use of pip and pipenv in Python to things like dev containers and Nix. These are important for reproducibility. The Netherlands eScience Centre python project template had a nice feature that allows updating projects created using a template when updates to the template itself are made.

Several talks looked at performant Python. We were surprised (perhaps unfairly) at how much impact simply upgrading to the latest Python version can have. Tools like numba and approaches such as vectorisation were well known, but tips for using list comprehensions, sometimes in preference even to Pandas apply operations, were appreciated and will be useful for several of our projects.

As you might expect from ARC we had significant involvement in the high-performance computing sessions, including Tuomas running a “birds of a feather” (BOF) event for the HPC RSE community and giving several talks. Talks not by us covered a range of topics, including the age-old comparison of the merits of different languages and porting between them, the newer frameworks aiming to ease GPU programming, portability between different hardware, and debugging parallel programs. We enjoyed trying out the Grace Hopper chips in IsambardAI, and discussing how to utilise HPC in the most environmentally sustainable way. The conclusion from Archer2 is that given the CO2 released by manufacturing HPC systems, the best option is to run them as intensively as possible since this maximises the research done for a given carbon cost – and indeed that personal lifestyle changes may be a better option for minimising your impact!

Green RSE was the focus for another BOF which some ARC staff attended. A SIG is being set up for this, trying to raise awareness of what RSEs can do and consider what training might be helpful. This is something we want to get involved with more at ARC, starting with an inventory of our current state in conjunction with the department’s Green Team.

The Fortran satellite event was very well run. It revealed that many people want similar improvements to the Fortran ecosystem to support automated testing and the like. We have recently started an initiative along those lines at ARC so will be trying to work with the wider community on this and avoid duplication of effort, having now met some relevant people.

Some talks focused more on particular research domains. Given ARC’s current efforts developing Trusted Research Environments (TREs) we were interested by the Turing’s approach. They worry less about packages coming into the secure environment, and advocated for just proxying CRAN, PyPI and the like, while making sure that your infrastructure is set up securely enough that things can’t get out unless you want them to. So if something does get in and cause havoc, it shouldn’t be able to egress any data and it should only affect a single study or project. This is also the approach we take in ARC’s TRE.

The unconference session was a highlight for some, particularly discussion of developing software as a medical device. This covered trying to work with people in the institution to come up with processes, but also trying to figure out what the role of RSEs and the Society of RSE should be in that process. Are we just followers or the ones coming up with the process? How much of the regulatory side is our responsibility and who else we need to work with? No firm answers from that, but lots of questions! A prototype tool we developed for one project may be useful here if we can get funding and/or collaborators to continue the work.

All found the keynote talks inspiring, especially the one from Anne-Marie Imafidon. The test driven development workshop got a mention as being really clearly presented with great materials, as did an interesting C++ graphics library called Morphologica.

We are all looking forward to next year’s conference in Warwick. On a personal level, I’m especially pleased that it is likely not to conflict with INSET days and I’ll be able to be there in person again.

Team (u)CLI are Go!

By Samantha Ahern, on 22 October 2024

ARC are excited to announce this year’s team for the CIUK Cluster Challenge – (u)CLI!

Group photo of team members of (u)CLI

Team (u)CLI

  • Zak Morgan, Dept of Computer Science
  • Rozenn Raffaut, Dept of Med Phys & Biomedical Eng
  • Qi Li,  Dept of Med Phys & Biomedical Eng
  • Yuliang Huang, Dept of Med Phys & Biomedical Eng
  • Tom Bickley, Dept of Chemistry
  • Shahid Khalid, Neonatology

 

 

The CIUK Cluster Challenge is a national inter-collegiate competition. This year there are 16 student teams taking part from across the UK.

The competition is formed of four challenges during October and November, before culminating in an additional four challenges at Computing Insights UK (CIUK) in Manchester in December.

The competition is an opportunity for students to develop technical skills in high performance compute, network with compute professionals and develop a range of employability skills.

Last week, the team competed in the 1st challenge, set by Alces Flight, and finished 2nd. Well done team (u)CLI!

We wish them well for their future challenges and supporting them at CIUK in Manchester.

Could you be a future Cluster Challenge team member? Start your HPC journey by joining the Cluster Club.