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Open Science & Scholarship Awards Winners!

By Kirsty, on 26 October 2023

A huge congratulations to all of the prize winners and a huge thanks to everyone that came to our celebration yesterday! It was lovely to hear from a selection of the winning projects and celebrate together. The OOSS team and the UKRN Local leads Sandy and Jessie had a lovely time networking with everyone.

Just in case you weren’t able to join us to hear the prize winners talk about their projects, Sandy has written short profiles of all of the winning projects below.

Category: Academic staff

Winner: Gesche Huebner and Mike Fells, BSEER, Built Environment

Gesche and Mike were nominated for the wide range of activities that they have undertaken to promote open science principles and activities in the energy research community. Among other things, they have authored a paper on improving energy research, which includes a checklist for authors, delivered teaching sessions on open, reproducible research to their department’s PhD students as well as staff at the Centre for Research Into Energy Demand Solutions, which inspired several colleagues to implement the practices, they created guidance on different open science practices aimed at energy researchers, including professionally filmed videos, as well as developed a toolkit for improving the quality, transparency, and replicability of energy research (i.e., TReQ), which they presented at multiple conferences. Gesche and Mike also regularly publish pre-analysis plans of their own research, make data and code openly available when possible, publish preprints, and use standard reporting guidelines.

Honourable mention: Henrik Singmann, Brain Sciences

Henrik was nominated for their consistent and impactful contribution to the development of free and open-source software packages, mostly for the statistical programming language R. The most popular software tool he developed is afex, which provides a user-friendly interface for estimating one of the most commonly used statistical methods, analysis of variance (ANOVA). afex, first released in 2012 and actively maintained since, has been cited over 1800 times. afex is also integrated into other open-source software tools, such as JASP and JAMOVI, as well as teaching materials. With Quentin Gronau, Henrik also developed bridgesampling, a package for principled hypothesis testing in a Bayesian statistical framework. Since its first release in 2017, bridgesampling has already been cited over 270 times. Other examples of packages for which they are the lead developer or key contributor are acss, which calculates the algorithmic complexity for short strings, MPTinR and MPTmultiverse, as well as rtdists and (together with their PhD student Kendal Foster) fddm. Further promoting the adoption of open-source software, Henrik also provides statistics consultation sessions at his department and uses open-source software for teaching the Master’s level statistics course.

Honourable mention: Smita Salunke, School of Pharmacy

Smita is recognised for their role in the development of the The Safety and Toxicity of Excipients for Paediatrics (STEP) database, an open-access resource compiling comprehensive toxicity information of excipients. The database was established in partnership with European and the United States Paediatric Formulation Initiative. To create the database, numerous researchers shared their data. To date, STEP has circa 3000 registered users across 44 countries and 6 continents. The STEP database has also been recognised as a Research Excellence Framework (REF) 2021 impact case study. Additionally, the European Medicines Agency frequently refer to the database in their communications; the Chinese Centre for Drug Evaluation have also cited the database in their recent guidelines. Furthermore, the Bill and Melinda Gates Foundation have provided funds to support a further 10 excipients for inclusion in STEP. The development and evaluation of the STEP database have been documented in three open-access research papers. Last but not least, the database has been integrated into teaching materials, especially in paediatric pharmacy and pharmaceutical sciences.

Category: Professional Services staff

Winner: Miguel Xochicale, Engineering Sciences and Mathematical & Physical Sciences

Miguel hosted the “Open-source software for surgical technologies” workshop at the 2023 Hamlyn symposium on Medical Robotics, a half-day session that brought together experts from software engineering in medical imagining, academics specialising in surgical data science, and researchers at the forefront of surgical technology development. During the workshop, speakers discussed the utilisation of cutting-edge hardware; fast prototyping and validation of new algorithms; maintaining fragmented source code for heterogenous systems; developing high performance of medical image computing and visualisation in the operating room; and benchmarks of data quality and data privacy. Miguel subsequently convened a panel discussion, underscoring the pressing need of additional open-source guidelines and platforms that ensure that open-source software libraries are not only sustainable but also receive long-term support and are seamlessly translatable to clinic settings. Miguel made recording of the talks and presentations, along with a work-in-progress white paper that is curated by them, and links to forums for inviting others to join their community available on Github.

Honourable mention: Marcus Pedersen, PHS

The Global Business School for Health (GSBH) introduced changes to its teaching style, notably, a flipped classroom. Marcus taught academics at their department how to use several mostly freely available learning technologies, such as student-created podcasts, Mentimeter, or Microsoft Sway, to create an interactive flipped classroom. Marcus further collected feedback from students documenting their learning journey and experiences with flipped teaching to evaluate the use of  the tools. Those insights have been presented in a book chapter (Betts, T. & Oprandi, P. (Eds.). (2022). 100 Ideas for Active Learning. OpenPress @ University of Sussex) and in talks for UCL MBA and Master’s students as well as at various conferences. The Association of Learning Technology also awarded Marcus the ELESIG Scholar Scheme 23/24 to continue their research.

Category: Students

Winner: Seán Kavanagh, Chemistry

Séan was nominated for his noteworthy contribution to developing user-friendly open-source software for the computational chemistry/physics research community. They have developed several codes during their PhD, such as doped, ShakeNBreak and vaspup2.0 for which they are the lead developer, as well as PyTASER and easyunfold for which they are a co-lead developer. Séan not only focuses on efficient implementation but also on user-friendliness along with comprehensive documentation and tutorials. They have produced comprehensive video walkthroughs of the codes and the associated theories, amassing over 20,000 views on YouTube and SpeakerDeck. It is important to note that software development is not the primary goal of Séan’s PhD research (which focuses on characterizing solar cell materials), and so their dedication to top-quality open-source software development is truly commendable. Additionally, Séan has consistently shared the data of all his publications and actively encourages open-access practices in his collaborations/mentorship roles, having assisted others in making their data available online and building functionality in their codes to save outputs in transferable and interoperable formats for data.

Honourable mention: Julie Fabre, Department of Neuromuscular Diseases

Julie is recognized for developing the open-source toolbox bombcell, that automatically assesses large amounts of data that are collected simultaneously from hundreds of neurons (i.e., groups of spikes). This tool considerably reduces labour per experiment and enables long-term neuron recording, which was previously intractable. As bombcell has been released under the open-source copyleft GNU General Public License 3, all future derived work will also be free and open source. Bombcell has already been used in another open-source toolbox with the same licence, UnitMatch. The toolbox’s code is extensively documented, and Julie adopted the Open Neurophysiology Environment, a standardised data format that enables quick understanding and loading of data files. In 2022, Julie presented bombcell in a free online-course. This course was attended by over 180 people, and the recorded video has since been viewed over 800 times online. Bombcell is currently regularly used in a dozen labs in Europe and the United States. It has already been used in two peer-reviewed publications, and in two manuscripts that are being submitted for publication with more studies underway.

Honourable mention: Maxime Beau, Division of Medicine

Maxime is recognized for leading the development of NeuroPyxels, the first open-source library to analyze Neuropixels data in Python. NeuroPyxels, hosted on a GitHub public repository and licensed under the GNU general public license, is actively used across several neuroscience labs in Europe and the United States (18 users have already forked the repository). Furthermore, NeuroPyxels relies on a widely accepted neural data format; this built-in compatibility with community standards ensures that users can easily borrow parts of NeuroPyxels and seamlessly integrate them with their application. NeuroPyxels has been a great teaching medium in several summer schools. Maxime has been a teaching assistant at the “Paris Spring School of Imaging and Electrophysiology” for three years, the FENS course “Interacting with Neural Circuits” at Champalimaud for two years, and the UCL Neuropixels course for three years where NeuroPyxels has been an invaluable tool to get students started with analysing neural data in Python.

Honourable mention: Yukun Zhou, Centre for Medical Image Computing

Yukun was nominated for developing open-source software for analysing images of the retina. The algorithm, termed AutoMorph, consists of an entire pipeline from image quality assessment to image segmentation to feature extraction in tabular form. A strength of AutoMorph is that it was developed using openly available data and so its underlying code can be easily reproduced and audited by other research groups.Although only published 1 year ago, AutoMorph has already been used by research groups from four continents and led to three new collaborations with Yukun’s research group at UCL. Moreover, AutoMorph has been run on the entire retinal picture dataset in the UK Biobank study with the features soon being made available for the global research community. Yukun has been complimented on the ease with which any researcher can immediately download the AutoMorph tools and deploy on their own datasets. Moreover, the availability of AutoMorph has encouraged other research groups, who are conducting similar work, to make their own proprietary systems openly available.

Category: Open resources, publishing, and textbooks 

Winner: Talia Isaacs, IOE, UCL’s Faculty of Education and Society

Talia is recognized for their diverse and continuous contributions to open access publishing. As Co-Editor of the journal Language Testing, they spearheaded SAGE’s CRediT pilot scheme, requiring standardized author contribution statements; they approved and supported Special Issue Editors’ piloting of transparent review for a special issue on “Open science in Language Testing”, encouraged authors to submit pre-prints, and championed open science in Editor workshops and podcasts. Additionally, in 2016, Multilingual Matters published Talia’s edited volume as their first open access monograph. Talia also discussed benefits of open access book publication in the publisher’s blog. As a result, the publisher launched an open access funding model, matching funding for at least one open access book a year. Further showcasing their dedication to open science, Talia archived the first corpus of patient informed consent documents for clinical trials on UK Data Service and UCL’s research repository, and delivered a plenary on “reducing research waste” at the British Association for Applied Linguistics event. They have also advocated for the adoption of registered reports at various speaking events, Editorial Board presentation, in a forthcoming article, editorial, and social media campaign. 

Honourable mention: Michael Heinrich and Banaz Jalil, School of Pharmacy

Banaz and Michael were nominated for co-leading the development of the ConPhyMP-Guidelines. Ethnopharmacology is a flourishing field of medical/pharmaceutical research. However, results are often non-reproducible. The ConPhyMP-Guidelines are a new tool that defines how to report the chemical characteristics of medicinal plant extracts used in clinical, pharmacological, and toxicological research. The paper in which the guidelines are presented is widely used (1613 downloads / 8,621 views since Sept 2022). An online tool, launched in August 2023 and accessible via the Society for Medicinal Plant and Natural Product Research (GA) website, facilitates the completion of the checklist. Specifically, the tool guides the researchers in selecting the most relevant checklists for conducting and reporting research accurately and completely.

Honourable mention: Talya Greene, Brain Sciences 

Talya is recognized for leading the creation of a toolkit that enables traumatic stress researchers to move toward more FAIR (Findable, Accessible, Interoperable and Reusable) data practices. This project is part of the FAIR theme within the Global Collaboration on Traumatic Stress. Two main milestones have so far been achieved: 1) In collaboration with Bryce Hruska, Talya has collated existing resources that are relevant to the traumatic stress research community to learn about and improve their FAIR data practices. 2) Talya also collaborated with Nancy Kassam-Adams to conduct an international survey with traumatic stress researchers about their attitudes and practices regarding FAIR data in order to identify barriers and facilitators of data sharing and reuse. The study findings have been accepted for publication in the European Journal of Psychotraumatology. Talya has also presented the FAIR toolkit and the findings of the survey at international conferences (e.g., the International Society for Traumatic Stress Studies annual conference, the European Society for Traumatic Stress Studies Biennial Conference).

Open Access Week: A year in review

By Kirsty, on 25 October 2023

It has become somewhat of a tradition now for there to be a post during Open Access Week that reviews the previous year. While the middle of October may seem like a strange time to take stock, it is after all the anniversary of the Launch of the Office for Open Science & Scholarship and we like to stop and celebrate another year.

This year we celebrated another successful conference and our first back in person for us! We also had another first with a workshop taking place simultaneously online and in person on the topic of equity in authorship. This work has been fed into a UCL statement on Authorship that will be released in the coming months.

We also released a brand new page bringing together all of the training and support information across all the Open Science affiliated teams to make it easier to navigate and get your questions answered.

In the past year all of the teams that form part of the office have worked hard on developing new services and making improvements to existing ones.

The Open Access team have been working hard updating RPS and the new Profiles tool to replace IRIS. They also support both Gold and Green Open Access Activity across the university.

Over 18,500 items have been uploaded to UCL Discovery in the last 12 months, bringing the total to over 166,000! Of these, there are over 23,000 theses to be explored. They have also made 3,383 papers Gold OA, 2,700 of which were using our transformative agreements with publishers.

The Research Data Management team have been working hard behind the scenes doing an overhaul of their support materials, testing new materials for training and supporting the ever-growing Research Data Repository.

In the past 12 months we have had over 1000 new datasets from 226 users. Quite notably, we have had over 200,000 downloads which just goes to show the value of sharing your data as well as your other research outputs!

The Citizen Science support service has moved on in leaps and bounds since this time last year, creating content, liaising with colleagues across the university, collaborating to launch the UCL Citizen Science Academy and this week we were able to launch the brand new Citizen Science online community.

Hopefully that gives you a taste of what we have been up to and the numbers of the last year, scroll back through the blog for more information and to get an idea of the detail of what we have been up to. It’s been a great year and here’s to the next!

Happy Open Access Week!

Open Access Week activities

By Kirsty, on 13 October 2023

Open Access Week is almost upon us!

Keep your eyes open for a series of blog posts on Creative Commons, citizen science, the recent activities of UCL Press and an exciting review of a year in open access.

This year’s theme is Community over Commercialisation. Creative Commons licences sit at the heart of this discussion. To this end, we invite you to a drop-in session on Tuesday the 24th of October to address questions around creating and using Creative Commons materials. The session is on Teams and you can join at any time. Bring along your questions or just join to discuss how CC supports equitable access to a wide range of works, from scholarly publications to open and FAIR data to images and music.

We have already announced our wonderful winners of the Open Science and Scholarship awards. UCL colleagues can also join us on Wednesday to celebrate and network with the winners, tickets are still available!

We will be posting and tweeting regularly throughout the week about the services and support available to researchers and I hope that we can get some good discussions going!

See you there!

Welcome to the new Training and Support Resources for Research site!

By Harry, on 11 July 2023

Since the UCL’s Office for Open Science and Scholarship founding, the team has been gathering resources to support researchers, academic staff, students, and everyone interested in learning and developing their skills and understandings about Open Science and the transition towards more democratic models to produce and share knowledge in equitable and inclusive ways.

The fast growth of Open practices and their translation into renewed local, regional, and global policies made necessary systematic resource realignments. During the last months, we have committed to re-organise those assets based on the myriad of users and their backgrounds far beyond the academic field, creating our new user-friendly website, ‘Training and Support Resources for Research’. Organised in the following up-to-date categories:

  • Advanced Research Computing: practical, hands-on training for various IT skills related to research, including high-performance computing, research software engineering and programming.
  • Citizen Science: our brand-new site with information about what UCL is doing in Citizen Science, innovative projects, and UCL’s Citizen Science Academy. Keep an eye on the Open@UCL Blog, where we will soon expand and go deep into the world of Citizen Science!
  • UCL Copyright advice: information and assistance by the UCL’s Library Services Copyright Team offers a wide range of copyright issues to UCL students and staff.
  • Creating Accessible Content: a compendium of simple steps to make your content more accessible and provide a more inclusive experience for all.
  • Doctoral Students Resources: a place for rigorous academic and non-academic creative researchers. Explore the resources and expand your skills to support your research, professional development and employability.
  • Information Governance: this site is for all members of UCL who manage highly confidential research information, including principal and chief investigators, staff, students, senior managers, and even those who just supervise people who directly handle confidential information and support staff who do not have direct access to data.
  • Open Access: designed to help UCL researchers understand how to make publications open access, meet open access requirements, use UCL’s Research Publications Service (RPS) and take advantage of open access funding.
  • Research Data Management and Planning: from the initial planning of a project through to archiving and sharing, the research data management team advises the UCL community on managing research outputs – across the research data lifecycle – in line with UCL’s expectations and external funding agencies’ requirements.
  • Research Funding Management: learn more about post-award processes through the online training course of the Fundamentals of Research Funding Management.
  • Research Integrity: summary of training opportunities currently available for staff and students. This list is not exhaustive and is intended to provide guidance as to options available. It will also be updated so do re-visit this page.
  • Research Transparency: research transparency covers how we ensure our research is responsible, reproducible, open and evidence-based.

If you scroll down the website, you will also find UCL’s Organisational Development training, Short Courses and some of UCL’s Communities and Forums that you can join to share your research, get advice and learn something new. We also collated an overview of the Research Support Teams!

Stay tuned to our news, events and training opportunities by subscribing to our mailing list,  following us on Twitter @UCLopenscience, or getting in touch with the Office for Open Science, and one of our teammates will answer as soon as we can!

How understanding Copyright helps you open up your research

By Harry, on 14 March 2023

Guest post by Christine Daoutis, Copyright Support Officer

“Can use this image I found free online?”

“I’m not sure how much of a book or an article it’s OK to copy”.

“This is my article; surely I can post it anywhere I want?”

These questions, and quite a few others, often come up in everyday research practice. They are all related to copyright. Whether you are reusing others’ materials (documents, figures, photos, video, software, data) or creating and sharing your own, understanding copyright ensures not only that you can respect others’ rights and stay within the law, but also that you can open up your research.

But understanding copyright is much more than a legal compliance issue. It is also more than an academic integrity issue. In short, it’s not just about following the rules, but also about understanding your own rights and using the rules flexibly. You can use your copyright knowledge as a tool to open up, rather than restrict, your research. For example, relying on copyright exceptions[1], and knowing how to find, reuse and acknowledge openly licensed materials[2], can give you much more freedom in how you can reuse others’ works. Crucially, knowing your rights as authors also allows you to share your research openly and, through licensing, determine how others may reuse it. Open Science practices – open access to publications, open data, open source software and hardware, co-creation projects – rely on an understanding of copyright.

To help you increase your knowledge and confidence around copyright, you can do any of the following:

Infographic showing key UCL copyright resources. Top three resources: UCL copyright survey, copyright essentials, training sessions. Supporting resources: copyright website, copyright blog, contact the UCL copyright support team.

  1. Complete the 3-minute UCL copyright support survey to rate your confidence and tell us what support you need. If you are not sure what you need to know, the survey gives you some ideas to choose from. Currently open until 31 March 2023.
  2. Complete the 20-minute Copyright Essentials online module. You will learn the basics at your own pace, using quizzes, short videos and academic-based scenarios.
  3. Book a training session delivered the copyright support team. These can be in person or online, and offer you the chance to ask questions.
  4. Visit the UCL copyright website for guidance on specific copyright topics.
  5. Follow the copyright blog for topical articles and updates.
  6. Contact the UCL copyright support team if you have a specific question, or would like to arrange bespoke training.

 

[1] https://blogs.ucl.ac.uk/copyright/2023/02/24/fair-dealing-week-2023-part-2-three-fair-dealing-exceptions/

[2] https://creativecommons.org/faq/

 

UCL Research Data Repository: Publishing research outputs for staff and PhD students across in 2022

By Harry, on 17 February 2023

Dr Christiana McMahon & Christine Buckley – Research Data Support Officers

At UCL, we have a dedicated Research Data Repository. This can be used by staff and research students to archive and preserve research outputs. This can be anything from your datasets to a poster you presented at a conference.

What have we published?

In total, we published 162 items!

Total number of views in 2022: 172059

Total number of downloads in 2022: 117830

What is a Data Management Plan (DMP)?

By Harry, on 15 February 2023

Dr Christiana McMahon & Christine Buckley – Research Data Support Officers

A Data Management Plan or DMP is an essential part of research data management and is usually completed in the first stage of any research project. It can help you think clearly about what data you will collect and how to store, curate, back up, archive and share this data.

You’ll find that many funders include a DMP as part of their grant applications, and we are more than happy to help review these.

You can check our recently updated webpage to learn how to create your DMP. 

How do I get support?

Just email us a copy of your plan to lib-researchsupport@ucl.ac.uk, or you can create your plan in DMPonline and request feedback.

How many DMPs have we reviewed?

Over the course of 2022, we reviewed a total of 39 plans, most of which supported grant applications submitted by researchers here at UCL.

The most popular months for sharing plans for feedback with the Research Data Management team were… April, June and October!

 

Welcome to Love Data Week 2023 at UCL

By Harry, on 13 February 2023

Post by Dr. Christiana McMahon & Christine Buckley – Research Data Support Officers

For those of you who have never experienced Love Data Week before, let me introduce it to you.

This is an international celebration of data. Organisations across the globe host a whole range of events intended for speakers to highlight their own data or to showcase best practices in research data management.

You can learn more about what is happening internationally by visiting the Love Data Week website.

As with every year, there is a theme. For this year and the theme is Data: Agent of Change.

“The theme this year is Data: Agent of Change. Love Data Week is about inspiring your community to use data to bring about changes that matter. Policy change, environmental change, social change… we can move mountains with the right data guiding our decisions.”- Love Data Week website

How are we celebrating this week?

This week we will be keeping active on our blog posts and Twitter account. We have been reviewing our activities over the last year and have found some great stuff.

  • We will be talking about Data Management Plans and how to get support with this.
  • We will be showcasing the training available to our community all year round.
  • We will be looking at interesting statistics from our Research Data Repository.
  • Finally, we will be showcasing some of the work from our community.

We’d love to showcase more, so please feel free to comment below for a shoutout.

 

Love Data Week 2023 #LoveData23

By Harry, on 7 February 2023

Guest post by Christine Buckley, Research Data Support Officer

This year from Monday, 13 February – Friday, 17 February, we will be celebrating your data!

Here at UCL, we’ve been reviewing the year and loving what we’ve found. Follow us on Twitter and our blog to get your daily dose of heart-warming stats, our lovely training, and our blossoming repository.

This year the theme for Love Data Week is: “Data: Agent of Change”. Leave us a comment below if this describes your work.

Office for Open Science & Scholarship 2022 review

By Harry, on 18 January 2023

A new exciting year is starting, and what better way to give the initial kick than celebrating the achievements and milestones of the multiple teams linked to the UCL Office for Open Science & Scholarship (OOSS). We are proud to see how the OOSS kept growing and consolidating itself inside UCL’s institutional culture, supporting academic staff, researchers and students.

One of last year’s highlights was undoubtedly the UCL Open Science Conference, reuniting people from all over the world in sessions discussing Citizen Science, Open data and code, Open and the Global South and more. You can still watch the recordings of day one and day two on our blog! And get ready to participate in the 2023 version in late April. You will hear about it soon on our pages and social media. We are working to make the event hybrid to facilitate participation across territories, do not miss your spot!

After various months of revisions and collaborative work, we published new Open Science Resources for 2022-2023. The first is the video ‘Open Science and Scholarship as part of UCL Research Culture’ and ‘Open Science – a practical guide for PhD students’.

Our office connects to several other teams inside UCL that make an exquisite blend of services, skills and expertise, and we want to celebrate their achievements and news.

The UCL Open Access team has grown their range of transformative publisher agreements and upgraded Research Publications Services (RPS). Users will notice a refreshed look and feel, differences to the Homepage layout, and a new menu structure and navigation. Check the step-by-step guide if you missed it!

UCL Press has proven the importance of open-access scholarly publishers, reaching six million downloads last May (and close to seven million now!), reaching 246 countries and territories, and publishing 272 titles since its launch in 2015.

The Bibliometrics team now is able to support Altmetric, which will be useful for anyone interested in public engagement or research impact, as well as individual researchers looking at the response to their work online. Altmetrics are “alternative metrics” – measuring the impact of research beyond scholarly literature. Helping to get a wider sense of the impact of papers that might otherwise be missed were we to focus on traditional academic citations.

Our Research and Data Management team upgraded their webpages, reviewed dozens of data management plans, and created brand new online Data Management Plan Templates with DMP online. Their services and the Bibliometrics team were both classified as excellent regarding the user’s experience of our online support service. We are proud of such a hard-working and supportive team!

During the second half of 2022, the OOSS gained two additional members: a Citizen Science Coordinator and a Support Officer. Both new team members are currently working with the Office Coordinator on ambitious projects that will see the light later this year, aiming to diversify the support and resources of our virtual office for wider audiences.

Undoubtedly, the diversity of professionals, backgrounds and interests made our small office inside Library, Culture, Collections & Open Science (LCCOS) a prosperous place to develop services, ideas and projects for wonderful audiences inside and outside our university.

Last year’s achievements were only possible due to the support of the university to embrace an open culture, thanks to the collaborative work between the teams, and always supporting each other and the office users. We will keep working together to democratise knowledge and keep UCL one of the Open Science & Scholarship leaders worldwide.